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#' Replace zero and NA values in the mmo object

ReplaceZero.Rd

This function replaces zero values in the feature table of an mmo object. Imputed data are stored in mmo$imputed_feature_data, to be used for downsteam analyses including PairwiseComp(). Note that imputation affects normalizations (Log-transformation, etc.), as well as chemical diversity calculations that uses presence/absence.

Usage

ReplaceZero(mmo, method = c("one", "half_min"))

Arguments

mmo

An mmo object containing feature_data

method

Replacement method:

  • "one": replace zeros and NA values with 1

  • "half_min": replace zeros and NA values with half of the smallest non-zero value in each feature (row)

Value

The updated mmo object