This function performs pairwise comparison between two groups in the mmo object,
calculating log2 fold change and adjusted p-values for given comparison of two groups.
The function adds the results to the mmo$pairwise data frame.
Usage
PairwiseComp(mmo, group1, group2, correction = "BH")
Arguments
- mmo
The mmo object
- group1
The name of the nominator group
- group2
The name of the denominator group
- correction
The method for multiple comparison correction. Options are 'BH', 'holm', 'bonferroni', etc. Inherits from p.adjust() (default: 'BH')
Value
The mmo object with pairwise comparison results added to mmo$pairwise
Examples
if (FALSE) {
mmo <- PairwiseComp(mmo, group1 = 'Control', group2 = 'Treatment1')
}