GetPerformanceFeatureLMM — GetPerformanceFeatureLMM • ecomet

This function performs linear mixed model analysis of all features against a phenotype performance in the metadata.

Usage

GetPerformanceFeatureLMM(
  mmo,
  phenotype,
  groups,
  DAM.list,
  comparisons,
  normalization = "Z"
)

mmo: The mmo object with feature data and metadata
phenotype: The name of the phenotype performance in the metadata
groups: A vector of group names from the metadata containing performance data
DAM.list: A list of DAMs to tag features
comparisons: A list of pairwise comparisons to add fold change columns
normalization: The normalization method to use for feature data. Options are 'None', 'Log', 'Meancentered', or 'Z' (default: 'Z')

A data frame containing regression results for each feature, including effect size, p-value, and fold change columns for specified comparisons.