BootstrapCumulativeRichness

This function bootstraps the cumulative richness of features across groups in the metadata by randomizing the order of groups. It performs multiple bootstrap iterations to estimate the mean and confidence intervals of cumulative richness at each step.

Usage

BootstrapCumulativeRichness(mmo, groups, n_boot = 1000, ci = 0.95)

Arguments

mmo

The mmo object containing feature data and metadata

groups

A vector of group names from the metadata to consider for cumulative richness calculation

n_boot

The number of bootstrap iterations to perform (default: 1000)

ci

The confidence interval width (e.g., 0.95 for 95% CI) (default: 0.95)

Value

A data frame containing the mean cumulative richness and confidence intervals for each group index, with columns for group index, mean, lower CI, and upper CI.

Examples

if (FALSE) {
groups <- c("Control", "Treatment1", "Treatment2")
bootstrapped_richness <- BootstrapCumulativeRichness(mmo, groups, n_boot = 1000, ci = 0.95)
}